Class SearchPresenter

Description of SearchPresenter

Nette\Application\UI\Presenter

SearchModule\SearchPresenter

Namespace: SearchModule
Author: Tomáš Hladík
Located at SearchModule/presenters/SearchPresenter.php

Methods summary
`public`	# `renderDefault( )` Render default search form page Render default search form page
`protected BaseModule\Form`	# `createComponentSearchForm( )` Creates search form Creates search form Returns `BaseModule\Form`
`public`	# `searchFormSubmitted( Nette\Application\UI\Form $f )` Search form processing Search form processing Parameters `$f`
`public`	# `renderExport( )` Forces a file to download (from the export of the search). Data are from the post request (variables exportType and export) Forces a file to download (from the export of the search). Data are from the post request (variables exportType and export)
`public`	# `saveResultSet( DispatchModule\ResultSet $resultSet, String $ext = "fasta" )` Forces a file to download Forces a file to download Parameters `$resultSet` Result set containing all sequences to be saved `$ext` Extension of the file, "fasta" as default
`public`	# `saveResultSetFasta( DispatchModule\ResultSet $resultSet )` Forces a fasta file to download Forces a fasta file to download Parameters `$resultSet` Result set containing all sequences to be saved
`public`	# `saveResultSetCsv( DispatchModule\ResultSet $resultSet, String $file = null )` Forces a CSV file to download Forces a CSV file to download Parameters `$resultSet` Result set containing all sequences to be saved `$file` Location to save the output of the file, "php://output" as default
`public`	# `saveResultSetJSON( DispatchModule\ResultSet $resultSet )` Forces a JSON file to download Forces a JSON file to download Parameters `$resultSet` Result set containing all sequences to be saved
`public`	# `actionGetOrganismName( )` Autocomplete - organism name Autocomplete - organism name
`public json`	# `actionGetResultSize( )` Returns result size in json response Returns result size in json response Returns json encoded array containing 'resultSize' key with integer value
`public`	# `actionGetImage( string $param )` Returns file response with image for specified structure Returns file response with image for specified structure Parameters `$param` name of the image to be displayed (format is ACCESSION_START_STOP)
`public`	# `actionGetTemplate( string $param )` Returns a file response with a requested template Returns a file response with a requested template Parameters `$param` id of the template
`public`	# `actionGetSequence( string $param, integer $start, integer $stop )` Gets sequence from database Gets sequence from database Parameters `$param` accesion number `$start` start position `$stop` stop position Throws `BaseModule\Exceptions\NotFoundException`
`public`	# `actionGetStructure( string $param, integer $start, integer $stop, integer $id )` Gets structure from database Gets structure from database Parameters `$param` accession number `$start` start position `$stop` stop position `$id` predicted structure id Throws `BaseModule\Exceptions\NotFoundException`
`public`	# `actionGetFullImage( string $param, integer $start = null, integer $stop = null, integer $id = null )` Gets full SVG iamge for accesion & prediction id Gets full SVG iamge for accesion & prediction id Parameters `$param` accession number OR file name for predicted file display (in case rest of the parameters are null) `$start` start of the sequence region `$stop` end of the sequence region `$id` prediction id
`public`	# `actionGetTaxonomyChoiceWithSpecies( integer $param )` Serves for AJAX calls - returns JSON-encoded list of taxonomies in sublevel Serves for AJAX calls - returns JSON-encoded list of taxonomies in sublevel Parameters `$param` taxonomy id
`public`	# `actionTaxonomybrowser( string $preselected = null, string $fulltext = null, boolean $fulltextOnlyMatches = true, string $fulltextIds = '', integer $treeElSize = 600 )` Display taxonomy browser - the top list categories are displayed Display taxonomy browser - the top list categories are displayed Parameters `$preselected` preselected ids (split by ',') `$fulltext` word to search for `$fulltextOnlyMatches` if true, only direct (non-expanded) paths to fulltext matches are shown `$fulltextIds` serialized array of ids of matches (helper to ease heavy use of DB in between same fulltext calls) `$treeElSize` helper determinig the tree height based on viewport size (is here just in case of JS problems since the actual height is set by JS anyway)
`public JSON`	# `actionGetSequencesByAccessions( string $param )` Serves for AJAX calls - list sequences by (multiple) accession numbers Serves for AJAX calls - list sequences by (multiple) accession numbers Parameters `$param` json-encoded array of accession numbers Returns JSON array containing all sequences with specified accession numbers
`public JSON`	# `actionGetFastaInfoByAccessions( string $param )` Serves for AJAX calls - list fasta file info (name, sequence, prediction) of sequences by (multiple) accession numbers Serves for AJAX calls - list fasta file info (name, sequence, prediction) of sequences by (multiple) accession numbers Parameters `$param` json-encoded array of accession numbers Returns JSON array containing all sequences with specified accession numbers
`protected BaseModule\Form`	# `createComponentTaxonomyBrowserForm( )` Creates search form Creates search form Returns `BaseModule\Form`

Methods inherited from BaseModule\BasePresenter
`__construct(), formatLayoutTemplateFiles(), startup()`

Properties summary
`protected DispatchModule\SearchParser`	`$parser` object that parses query and returns result object that parses query and returns result Inject	#
`protected BaseModule\Services\DbService`	`$dbService` object that parses query and returns result object that parses query and returns result Inject	#

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Class SearchPresenter

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