Overview

Namespaces

  • AnalyseModule
    • Models
  • BaseModule
    • Exceptions
    • Models
    • Repository
    • Services
  • DispatchModule
    • Helpers
    • Models
    • Tools
  • PredictModule
  • SearchModule

Classes

  • BaseMatch
  • BaseParser
  • BlastMatch
  • BlatMatch
  • PredictParser
  • ResultSet
  • SearchParser
  • Sequence
  • Overview
  • Namespace
  • Class

Namespace DispatchModule

Namespaces summary
DispatchModule\Helpers
DispatchModule\Models
DispatchModule\Tools
Classes summary
BaseMatch

BaseMatch contains default implementation of some mandatory informations - serves only as a helper (reduces code duplicity)

BaseParser BaseParser is parent class for all parsers (SearchParser for searching and PredictParser for predicting)
BlastMatch Match is an envelope holding information about one specific match
BlatMatch Match is an envelope holding information about one specific match
PredictParser

PredictParser is responsible for parsing predict form (from user) and running services for needed tools - it also contains support functions for connecting search form with tools

ResultSet ResultSet is an envelope holding information about set of sequences
SearchParser

SearchParser is responsible for parsing form query (from user) and running services for needed tools - it also contains support functions for connecting search form with tools

Sequence Sequence is an envelope holding information about one specific sequence
API documentation generated by ApiGen