rPredictorDB is a predictive database of secondary structures of individual RNAs and their formatted plots. The structures are generated by template-based prediction of RNA secondary structure with experimentally identified structures as templates. RNAs with large secondary structure are visualized using a template-based visualization method allowing for their formatted, clear and readable display. The web also allows for secondary structure template-based prediction for user-uploaded RNA sequences using templates stored in rPredictorDB.

Citations:

• Jelinek J. et al.: rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots. Database, Volume 2019, 2019, doi:10.3389/database/baz047
• Pánek J, Modrák M, Schwarz M: An Algorithm for Template-Based Prediction of Secondary Structures of Individual RNA Sequences. Front Genet, 8, 147. doi:10.3389/fgene.2017.00147
• Elias R, Hoksza D: TRAVeLer: a tool for template-based RNA secondary structure visualization. BMC Bioinformatics. 2017 Nov 15;18(1):487. doi:10.1186/s12859-017-1885-4