Overview

Namespaces

  • AnalyseModule
    • Models
  • BaseModule
    • Exceptions
    • Models
    • Repository
    • Services
  • DispatchModule
    • Helpers
    • Models
    • Tools
  • PredictModule
  • SearchModule

Classes

  • AnalysePresenter
  • ConservancyPresenter
  • Overview
  • Namespace
  • Class

Class ConservancyPresenter

Handles displaying of conservancy comparison results

Nette\Application\UI\Presenter
Extended by BaseModule\BasePresenter
Extended by AnalyseModule\ConservancyPresenter
Namespace: AnalyseModule
Located at AnalyseModule/presenters/ConservancyPresenter.php
Methods summary
public
# renderDefault( )

Render page displaying all the results (svg pictures) along with form for resubmitting with different window size

Render page displaying all the results (svg pictures) along with form for resubmitting with different window size

public
# renderDetail( string $tmpdir, integer $winsize, string $accession )

Full svg picture display

Full svg picture display

Parameters

$tmpdir
rawurldecode-d path to temporary directory used (note that "/" in file are replaced by "++")
$winsize
window size used for comparison
$accession
accession number of the sequence to display
public
# actionExport( string $tmpdir, integer $winsize )

Export comparison result into zip archive and offers to download it

Export comparison result into zip archive and offers to download it

Parameters

$tmpdir
path to directory with comparison results
$winsize
window size
protected BaseModule\Form
# createComponentAnalyseForm( )

Creates form for resubmitting picked sequences for conservation comparison with different window size

Creates form for resubmitting picked sequences for conservation comparison with different window size

Returns

BaseModule\Form
Methods inherited from BaseModule\BasePresenter
__construct(), formatLayoutTemplateFiles(), startup()
Properties summary
protected AnalyseModule\Models\ConservancyComparator $conservancyComparator

Inject

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