Class ConservancyComparator

ConservancyComparator handles execution of ConservancyComparator utility. It allows user to compare several sequences and visualize results in SVG plots

Nette\Object

Extended by

BaseModule\Services\BaseService

Extended by

AnalyseModule\Models\BaseTool

Extended by

AnalyseModule\Models\ConservancyComparator

Namespace: AnalyseModule\Models
Located at AnalyseModule/models/ConservancyComparator.php

Methods summary
`public array`	# `execute( array $accessions, integer $winsize = null )` Execute comparison Execute comparison Parameters `$accessions` list of accession number that should be compared `$winsize` window size Returns array sequences compared (complete records loaded from database for specified accession numbers) Throws `BaseModule\Exceptions\ToolException`
`public string`	# `export( string $tmpPath, array $svgs, integer $winsize )` Export generated results - save all svgs (colored), fastas and info file into a zip archive Export generated results - save all svgs (colored), fastas and info file into a zip archive Parameters `$tmpPath` path to directory containig the result of the comparison `$svgs` array containing generated svgs (as a text since it includes changes made on-the-fly by D3.js) `$winsize` window size Returns string path to generated archive
`public static`	# `deleteOldDirs( )` Delete all conservancycomparator temporary directories older than 24 hours Delete all conservancycomparator temporary directories older than 24 hours
`public string`	# `getTmpDir( )` Get path to temporary directory Get path to temporary directory Returns string path to temporary directory
`public integer`	# `getWinSize( )` Get window size Get window size Returns integer window size used for comparison tagger

Methods inherited from AnalyseModule\Models\BaseTool
`loadSequencesFromDb()`

Methods inherited from BaseModule\Services\BaseService
`__construct()`

Properties inherited from BaseModule\Services\BaseService
`$container`