Overview

Namespaces

  • AnalyseModule
    • Models
  • BaseModule
    • Exceptions
    • Models
    • Repository
    • Services
  • DispatchModule
    • Helpers
    • Models
    • Tools
  • PredictModule
  • SearchModule

Classes

  • BaseTool
  • ConservancyComparator
  • Overview
  • Namespace
  • Class

Class BaseTool

BaseTool contains method for loading the sequences from the database - it is the recommended model tha other tool models sohuld inherit from

Nette\Object
Extended by BaseModule\Services\BaseService
Extended by AnalyseModule\Models\BaseTool

Direct known subclasses

AnalyseModule\Models\ConservancyComparator
Namespace: AnalyseModule\Models
Located at AnalyseModule/models/BaseTool.php
Methods summary
protected array
# loadSequencesFromDb( array $accessions )

Load complete sequences (given by list of accessions) from database

Load complete sequences (given by list of accessions) from database

Parameters

$accessions
accession numbers (along with start and stops) to load

Returns

array
complete sequences
Methods inherited from BaseModule\Services\BaseService
__construct()
Properties inherited from BaseModule\Services\BaseService
$container
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