Class BaseMatch

BaseMatch contains default implementation of some mandatory informations - serves only as a helper (reduces code duplicity)

Namespace: DispatchModule
Located at DispatchModule/BaseMatch.php

Methods summary
`public`	# `__construct( string $label )` Constructor used to save a name of tool Constructor used to save a name of tool Parameters `$label`
`public`	# `setCoverage( float $coverage )` Sets the coverage of the match i.e. length(match)/length(query) Sets the coverage of the match i.e. length(match)/length(query) Parameters `$coverage` coverage
`public integer`	# `getCoverage( )` Gets the coverage of the match Gets the coverage of the match Returns integer coverage
`public`	# `setIdentity( float $identity )` Sets the identity of the match i.e. #hits/length(match) Sets the identity of the match i.e. #hits/length(match) Parameters `$identity` identity
`public integer`	# `getIdentity( )` Gets the identity of the match Gets the identity of the match Returns integer identity
`public integer`	# `getScore( )` Gets the bit-score of the match Gets the bit-score of the match Returns integer bit-score

Properties summary
`public string`	`$label` Human-readable short description (name) of the used alignment tool Human-readable short description (name) of the used alignment tool	#
`public string`	`$subsequence` Matching subsequence of query Matching subsequence of query	#
`public integer`	`$queryStartPosition` Starting index of matching subsequence in query Starting index of matching subsequence in query	#
`public integer`	`$queryStopPosition` Stop index of matching subsequence in query Stop index of matching subsequence in query	#
`public integer`	`$dbStartPosition` Starting index of matching subsequence in db Starting index of matching subsequence in db	#
`public integer`	`$dbStopPosition` Stop index of matching subsequence in db Stop index of matching subsequence in db	#
`public array`	`$scores` List of all scores by the tool in format 'scoreName' => 'value' List of all scores by the tool in format 'scoreName' => 'value'	# `array()`