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  • AnalyseModule
    • Models
  • BaseModule
    • Exceptions
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  • DispatchModule
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  • PredictModule
  • SearchModule

Classes

  • BaseModel
  • BlastModel
  • BlastXMLParser
  • BlatModel
  • Cppredict2Model
  • CppredictModel
  • FastaModel
  • FileModel
  • Overview
  • Namespace
  • Class

Class BlastModel

BlastModel cooperates with Blast

BaseModule\Models\BaseModel
Extended by DispatchModule\Models\BlastModel
Namespace: DispatchModule\Models
Located at DispatchModule/models/BlastModel.php
Methods summary
public
# __construct( string $input )

Constructor of BlasModel - sets input file

Constructor of BlasModel - sets input file

Parameters

$input
input path
public array
# executeBlastSearch( string $output = "", string $format = "", string $database = "" )

Executing query saved in the blastTemp directory

Executing query saved in the blastTemp directory

Parameters

$output
path where to store output
$format
format of output
$database
blast database that should be used for alignment

Returns

array
output of the blast tool
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