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Classes

  • BaseModel
  • BlastModel
  • BlastXMLParser
  • BlatModel
  • Cppredict2Model
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  • Overview
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Class BlatModel

BlatModel cooperates with Blat

BaseModule\Models\BaseModel
Extended by DispatchModule\Models\BlatModel
Namespace: DispatchModule\Models
Located at DispatchModule/models/BlatModel.php
Methods summary
public
# __construct( string $input, string $fileId = null )

Constructor sets input

Constructor sets input

Parameters

$input
input file path
$fileId
identifier of the output file
public String
# executeBlatSearch( integer $minMatch, integer $minCoverage )

Executing query saved in the blatTemp directory

Executing query saved in the blatTemp directory

Parameters

$minMatch
Minimal (percentage) match with query
$minCoverage
Minimal (percentage) coverage of query

Returns

String
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