Class CppredictModel

CppredictModel cooperates with Cppredict

BaseModule\Models\BaseModel

Extended by

DispatchModule\Models\CppredictModel

Namespace: DispatchModule\Models
Located at DispatchModule/models/CppredictModel.php

Methods summary
`public`	# `logRecord( string $message )` Log message output for debugging purposes, incl. formatting. Log message output for debugging purposes, incl. formatting. Parameters `$message` Log message to be saved
`public`	# `__construct( boolean $debug = -1 )` Fills in the default values for running cp_predict.py Fills in the default values for running cp_predict.py Parameters `$debug` if set to true, debug mode is on
`public string`	# `buildCommand( string $inputSeqFasta )` Builds the shell command to execute. Everything except the input FASTA sequence name is known from inside CppredictModel, so the only argument is the input FASTA name. Builds the shell command to execute. Everything except the input FASTA sequence name is known from inside CppredictModel, so the only argument is the input FASTA name. Parameters `$inputSeqFasta` The path to the input FASTA file, relative to $cp_root Returns string The command to pass to shell_exec() to run CP-predict

Properties summary
`protected string`	`$cpRoot` Used as: cp_predict.py -r $cp_root Used as: cp_predict.py -r $cp_root	#
`protected string`	`$tempDir` This is where the temporary files for cp_predict are created. This is where the temporary files for cp_predict are created.	#
`protected string`	`$templates` Used as: cp_predict.py -t $templates Used as: cp_predict.py -t $templates	#
`protected string`	`$tmap` Used as: cp_predict.py -m $tmap Used as: cp_predict.py -m $tmap	#
`protected string`	`$defaultPredictionSettings` Passed directly. Will change when further input fields are enabled. Passed directly. Will change when further input fields are enabled.	#