Overview

Namespaces

  • AnalyseModule
    • Models
  • BaseModule
    • Exceptions
    • Models
    • Repository
    • Services
  • DispatchModule
    • Helpers
    • Models
    • Tools
  • PredictModule
  • SearchModule

Classes

  • AnalyseModule\AnalysePresenter
  • AnalyseModule\ConservancyPresenter
  • AnalyseModule\Models\BaseTool
  • AnalyseModule\Models\ConservancyComparator
  • BaseModule\BasePresenter
  • BaseModule\DiscoveredViewReflection
  • BaseModule\ErrorPresenter
  • BaseModule\Form
  • BaseModule\HomepagePresenter
  • BaseModule\Models\BaseModel
  • BaseModule\Models\FileModel
  • BaseModule\PesekPresenter
  • BaseModule\Repository\BaseRepository
  • BaseModule\Repository\TestRepository
  • BaseModule\RouterFactory
  • BaseModule\RssPresenter
  • BaseModule\Services\Authenticator
  • BaseModule\Services\BaseService
  • BaseModule\Services\DbService
  • DispatchModule\BaseMatch
  • DispatchModule\BaseParser
  • DispatchModule\BlastMatch
  • DispatchModule\BlatMatch
  • DispatchModule\Helpers\RnaplotHelper
  • DispatchModule\Helpers\TravelerHelper
  • DispatchModule\Models\BaseModel
  • DispatchModule\Models\BlastModel
  • DispatchModule\Models\BlastXMLParser
  • DispatchModule\Models\BlatModel
  • DispatchModule\Models\Cppredict2Model
  • DispatchModule\Models\CppredictModel
  • DispatchModule\Models\FastaModel
  • DispatchModule\Models\FileModel
  • DispatchModule\PredictParser
  • DispatchModule\ResultSet
  • DispatchModule\SearchParser
  • DispatchModule\Sequence
  • DispatchModule\Tools\AnnotationDbTool
  • DispatchModule\Tools\BaseTool
  • DispatchModule\Tools\Cppredict2Tool
  • DispatchModule\Tools\DbTool
  • DispatchModule\Tools\SimilarityTool
  • DispatchModule\Tools\TaxonomyDbTool
  • PredictModule\PredictPresenter
  • SearchModule\SearchPresenter

Interfaces

  • DispatchModule\Tools\ToolInterface

Exceptions

  • BaseModule\Exceptions\BaseException
  • BaseModule\Exceptions\NotFoundException
  • BaseModule\Exceptions\ToolException
  • Overview
  • Namespace
  • Class
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<?php

namespace BaseModule;

use \Nette\Application\Routers\RouteList,
    \Nette\Application\Routers\Route;

/**
 * Router factory
 */
class RouterFactory extends \Nette\Object {

    /**
     * Creates routes for whole application
     *
     * @return \Nette\Application\IRouter
     */
    public function createRouter() {
        $router = new RouteList();
        $router[] = new Route('index.php', 'Base:Homepage:default', Route::ONE_WAY);
        $router[] = new Route('error', 'Base:Error:default');

        // routes
        $router[] = new Route('search[/<action>][/<param>][/<start>][/<stop>][/<id>]', 'Search:Search:default');
        $router[] = new Route('predict', 'Predict:Predict:default');
        $router[] = new Route('rss[/<action>]', 'Base:Rss:view');
        $router[] = new Route('contact', 'Base:Homepage:contact');
        $router[] = new Route('download', 'Base:Homepage:download');
        $router[] = new Route('pesek', 'Base:Pesek:default');
        /*** ANALYTICAL MODULE specific routes ***/
        $router[] = new Route('analyse/conservancy[/<action>/<tmpdir>/<winsize>[/<accession>]]', 'Analyse:Conservancy:default');
        $router[] = new Route('analyse[/<action>]', 'Analyse:Analyse:default');

        //$router[] = new Route('<module>/<presenter>[/<action>][/<id>]', 'User:default');
        $router[] = new Route('<presenter>/<action>[/<id>]', 'Base:Homepage:default');

        return $router;
    }

}
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