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  • AnalyseModule
    • Models
  • BaseModule
    • Exceptions
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  • DispatchModule
    • Helpers
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  • PredictModule
  • SearchModule

Classes

  • AnalyseModule\AnalysePresenter
  • AnalyseModule\ConservancyPresenter
  • AnalyseModule\Models\BaseTool
  • AnalyseModule\Models\ConservancyComparator
  • BaseModule\BasePresenter
  • BaseModule\DiscoveredViewReflection
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  • BaseModule\Form
  • BaseModule\HomepagePresenter
  • BaseModule\Models\BaseModel
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  • BaseModule\Repository\BaseRepository
  • BaseModule\Repository\TestRepository
  • BaseModule\RouterFactory
  • BaseModule\RssPresenter
  • BaseModule\Services\Authenticator
  • BaseModule\Services\BaseService
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  • DispatchModule\BaseMatch
  • DispatchModule\BaseParser
  • DispatchModule\BlastMatch
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  • DispatchModule\Helpers\RnaplotHelper
  • DispatchModule\Helpers\TravelerHelper
  • DispatchModule\Models\BaseModel
  • DispatchModule\Models\BlastModel
  • DispatchModule\Models\BlastXMLParser
  • DispatchModule\Models\BlatModel
  • DispatchModule\Models\Cppredict2Model
  • DispatchModule\Models\CppredictModel
  • DispatchModule\Models\FastaModel
  • DispatchModule\Models\FileModel
  • DispatchModule\PredictParser
  • DispatchModule\ResultSet
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  • DispatchModule\Sequence
  • DispatchModule\Tools\AnnotationDbTool
  • DispatchModule\Tools\BaseTool
  • DispatchModule\Tools\Cppredict2Tool
  • DispatchModule\Tools\DbTool
  • DispatchModule\Tools\SimilarityTool
  • DispatchModule\Tools\TaxonomyDbTool
  • PredictModule\PredictPresenter
  • SearchModule\SearchPresenter

Interfaces

  • DispatchModule\Tools\ToolInterface

Exceptions

  • BaseModule\Exceptions\BaseException
  • BaseModule\Exceptions\NotFoundException
  • BaseModule\Exceptions\ToolException
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<?php

namespace PredictModule;

class PredictPresenter extends \BaseModule\BasePresenter {

    /**
     * @var \DispatchModule\PredictParser object that parses query and returns result
     * @Inject
     */
    protected $parser;

    /**
     * Render default predict form page
     */
    public function renderDefault() {
        $this->template->parameterList = $this->parser->getParameterList();
        $this->template->toolList = $this->parser->getTools();

        if ($this->getHttpRequest()->getQuery('noajax') !== null) {
            $this->template->noajax = true;
        }
    }

    /**
     * Creates prediction form
     *
     * @return \BaseModule\Form
     */
    protected function createComponentPredictForm() {
        // get all wanted attributes
        $form = $this->parser->addFormParameters(new \BaseModule\Form);

        $form->addSubmit("predict", "Predict");
        $form->onSuccess[] = $this->predictFormSubmitted;
        return $form;
    }

    /**
     * Predict form processing
     *
     * @param \Nette\Application\UI\Form $f
     */
    public function predictFormSubmitted(\Nette\Application\UI\Form $f) {
        $resultSet = $this->parser->parseForm($f);
        if ($resultSet && count($resultSet) > 0) {
            if ($this->isAjax()) {
                $this->sendResponse(new \Nette\Application\Responses\JsonResponse($resultSet));
            } else {
                \Nette\Diagnostics\Debugger::dump($resultSet);
            }
        }
    }

}

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